BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028D06LP1|AL428895
(606 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 1094 0.0
>3x_Contig1619
Length = 7770
Score = 1094 bits (545), Expect = 0.0
Identities = 587/606 (96%), Gaps = 5/606 (0%)
Strand = Plus / Minus
Query: 1 gatctccaatgttggtaattggagttgagctgtaaactcaatgactgtgttcttcatagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4695 gatctccaatgttggtaattggagttgagctgtaaactcaatgactgtgttcttcatagg 4636
Query: 61 ttcgattcctattcccttcaaatatatagtttttatagcttaatggttaaagcttctcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4635 ttcgattcctattcccttcaaatatatagtttttatagcttaatggttaaagcttctcac 4576
Query: 121 tgttaatgagatgatataggttcaattcctattaaagacttaattattgtataatatgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4575 tgttaatgagatgatataggttcaattcctattaaagacttaattattgtataatatgta 4516
Query: 181 ggggttatagttaaatttggtagaacgaatgctttgcatgcatttaatatgagttcaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4515 ggggttatagttaaatttggtagaacgaatgctttgcatgcatttaatatgagttcaagt 4456
Query: 241 ctcattaactccattatatataa-tccccgcbmsckcstcaccggtatataccggtgagg 299
||||||||||||||||||||||| ||||||| | | ||||||||||||||||||||||
Sbjct: 4455 ctcattaactccattatatataactccccgcgacctcctcaccggtatataccggtgagg 4396
Query: 300 aggt---gggangncatagaaactataattcaatcggttagaatagtattttgataaggt 356
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4395 aggtcgcggggag-catagaaactataattcaatcggttagaatagtattttgataaggt 4337
Query: 357 accaatataggttcaattcctattagtttcatatatatttdartggatggttgactgagt 416
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 4336 accaatataggttcaattcctattagtttcatatatatttaaatggatggttgactgagt 4277
Query: 417 ggtttaaggtgtaatacttgagatattataagtcttttaggcttcgtaggttcaaatcct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276 ggtttaaggtgtaatacttgagatattataagtcttttaggcttcgtaggttcaaatcct 4217
Query: 477 acatcattcgtatatratataatactaatatrtagtrttatatattabccacgccacctg 536
||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||
Sbjct: 4216 acatcattcgtatataatataatactaatatatagtattatatattacccacgccacctg 4157
Query: 537 atactattagtatcaggtggctttaataattcattgaattatttacgaaatatatatatt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4156 atactattagtatcaggtggctttaataattcattgaattatttacgaaatatatatatt 4097
Query: 597 atvtat 602
|| |||
Sbjct: 4096 atatat 4091
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.39 0.713 1.32
Gapped
Lambda K H
1.39 0.713 1.32
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4404
Number of Sequences: 1807
Number of extensions: 4404
Number of successful extensions: 126
Number of sequences better than 1.0e-20: 1
length of query: 606
length of database: 10,358,551
effective HSP length: 16
effective length of query: 590
effective length of database: 10,329,639
effective search space: 6094487010
effective search space used: 6094487010
T: 0
A: 40
X1: 5 (10.0 bits)
X2: 14 (28.1 bits)
S1: 12 (24.6 bits)
S2: 50 (100.9 bits)